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| 1.1 Carbohydrate Metabolism |
Overview of biosynthetic pathways |
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Glycolysis / Gluconeogenesis |
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Citrate cycle (TCA cycle) |
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Pentose phosphate pathway |
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Pentose and glucuronate interconversions |
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Fructose and mannose metabolism |
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Galactose metabolism |
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Ascorbate and aldarate metabolism |
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Starch and sucrose metabolism |
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Aminosugars metabolism |
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Nucleotide sugars metabolism |
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Pyruvate metabolism |
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Glyoxylate and dicarboxylate metabolism |
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Propanoate metabolism |
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Butanoate metabolism |
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C5-Branched dibasic acid metabolism |
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Inositol metabolism |
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Inositol phosphate metabolism |
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| 1.2 Energy Metabolism |
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Oxidative phosphorylation |
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ATP synthesis |
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Photosynthesis |
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Carbon fixation |
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Reductive carboxylate cycle (CO2 fixation) |
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Methane metabolism |
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Nitrogen metabolism |
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Sulfur metabolism |
| 1.3 Lipid Metabolism |
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Fatty acid biosynthesis (path 1) |
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Fatty acid biosynthesis (path 2) |
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Fatty acid metabolism |
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Synthesis and degradation of ketone bodies |
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Biosynthesis of steroids |
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Bile acid biosynthesis |
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C21-Steroid hormone metabolism |
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Androgen and estrogen metabolism |
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Glycerolipid metabolism |
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Glycerophospholipid metabolism |
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Prostaglandin and leukotriene metabolism |
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| 1.4 Nucleotide Metabolism |
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Purine metabolism |
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Pyrimidine metabolism |
| 1.5 Amino Acid Metabolism |
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Glutamate metabolism |
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Alanine and aspartate metabolism |
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Glycine, serine and threonine metabolism |
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Methionine metabolism |
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Cysteine metabolism |
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Valine, leucine and isoleucine degradation |
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Valine, leucine and isoleucine biosynthesis |
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Lysine biosynthesis |
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Lysine degradation |
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Arginine and proline metabolism |
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Histidine metabolism |
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Tyrosine metabolism |
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Phenylalanine metabolism |
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Tryptophan metabolism |
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Phenylalanine, tyrosine and tryptophan biosynthesis |
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Urea cycle and metabolism of amino groups |
| 1.6 Metabolism of Other Amino Acids |
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beta-Alanine metabolism |
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Taurine and hypotaurine metabolism |
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Aminophosphonate metabolism |
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Selenoamino acid metabolism |
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Cyanoamino acid metabolism |
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D-Glutamine and D-glutamate metabolism |
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D-Arginine and D-ornithine metabolism |
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D-Alanine metabolism |
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Glutathione metabolism |
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| 1.7 Glycan Biosynthesis and Metabolism |
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N-Glycan biosynthesis |
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High-mannose type N-glycan biosynthesis |
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N-Glycan degradation |
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O-Glycan biosynthesis |
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Chondroitin / heparan sulfate biosynthesis |
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Keratan sulfate biosynthesis |
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Glycosaminoglycan degradation |
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Lipopolysaccharide biosynthesis |
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Peptidoglycan biosynthesis |
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Glycosphingolipid metabolism |
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Blood group glycolipid biosynthesis - lactoseries |
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Blood group glycolipid biosynthesis - neo-lactoseries |
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Globoside metabolism |
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Ganglioside biosynthesis |
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| 1.8 Biosynthesis of Polyketides and Nonribosomal Peptides |
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Type I polyketide structures |
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Biosynthesis of 12-, 14- and 16-membered macrolides |
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Biosynthesis of ansamycins |
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Biosynthesis of type II polyketide backbone |
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Biosynthesis of type II polyketide products |
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Polyketide sugar unit biosynthesis |
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Nonribosomal peptide structures |
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Biosynthesis of siderophore group nonribosomal peptides |
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Biosynthesis of vancomycin group antibiotics |
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| 1.9 Metabolism of Cofactors and Vitamins |
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Thiamine metabolism |
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Riboflavin metabolism |
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Vitamin B6 metabolism |
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Nicotinate and nicotinamide metabolism |
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Pantothenate and CoA biosynthesis |
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Biotin metabolism |
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Folate biosynthesis |
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One carbon pool by folate |
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Retinol metabolism |
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Porphyrin and chlorophyll metabolism |
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Ubiquinone biosynthesis |
| 1.10 Biosynthesis of Secondary Metabolites |
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Terpenoid biosynthesis |
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Diterpenoid biosynthesis |
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Monoterpenoid biosynthesis |
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Limonene and pinene degradation |
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Indole and ipecac alkaloid biosynthesis |
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Stilbene, coumarine and lignin biosynthesis |
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Flavonoid biosynthesis |
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Alkaloid biosynthesis I |
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Alkaloid biosynthesis II |
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Penicillins and cephalosporins biosynthesis |
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beta-Lactam resistance |
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Streptomycin biosynthesis |
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Tetracycline biosynthesis |
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Clavulanic acid biosynthesis |
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Puromycin biosynthesis |
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Novobiocin biosynthesis |
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| 1.11 Biodegradation of Xenobiotics |
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Caprolactam degradation |
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Biphenyl degradation |
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Toluene and xylene degradation |
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gamma-Hexachlorocyclohexane degradation |
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3-Chloroacrylic acid degradation |
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1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation |
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2,4-Dichlorobenzoate degradation |
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1,2-Dichloroethane degradation |
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Tetrachloroethene degradation |
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Styrene degradation |
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1,4-Dichlorobenzene degradation |
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Nitrobenzene degradation |
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Ethylbenzene degradation |
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Fluorene degradation |
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Carbazole degradation |
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Benzoate degradation via CoA ligation |
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Benzoate degradation via hydroxylation |
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Atrazine degradation |
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Bisphenol A degradation |
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1- and 2-Methylnaphthalene degradation |
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2. Genetic Information Processing |
| 2.1 Transcription |
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RNA polymerase |
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Transcription factors |
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RNA biosynthesis
mRNA - Bacteria
Eukaryotes
tRNA - Bacteria
Eukaryotes
rRNA - Bacteria
Eukaryotes
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| 2.2 Translation |
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Ribosome |
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Translation factors |
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Aminoacyl-tRNA biosynthesis |
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Protein biosynthesis
Bacteria
Eukaryotes
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| 2.3 Sorting and Degradation |
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Protein export |
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Type II secretion system |
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Type III secretion system |
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Type IV secretion system |
| 2.4 Replication and Repair |
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DNA polymerase |
| 5.3 Metabolic Disorders |
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| Last updated: March 29, 2005 |